Assessing ChIP-seq sample quality with ChIPQC
نویسندگان
چکیده
2 Example 1: ENCODE data set with problematic samples 2 2.1 Experiment sample sheet . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 2.2 Constructing a ChIPQCexperiment object . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 2.3 Quality metrics summary . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4 2.4 Generating a summary QC report for experimental sample groups . . . . . . . . . . . . . . . . . . . . . 5 2.4.1 Report: Overview . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5 2.4.2 Report: QC Summary table . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5 2.4.3 Report: QC Results plots . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5 2.4.4 Report: Files and Versions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6
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